{ "_id": "6adbe38ead718eea59ecc34a", "Package": "gaawr2", "Title": "Genetic Association Analysis", "Version": "0.0.9", "Date": "2026-10-23", "Authors@R": "c(person(\"Jing Hua\", \"Zhao\", , role = c(\"aut\", \"cre\"),\nemail = \"jinghuazhao@hotmail.com\",\ncomment = c(ORCID = \"https://orcid.org/0000-0002-1463-5870\", ORCID = \"0000-0003-4930-3582\")),\nperson(\"Benjamin\", \"Altmann\", role = \"ctb\"),\nperson(\"Brian\", \"Ripley\", role = \"ctb\")\n)", "Maintainer": "Jing Hua Zhao ", "Description": "This is a companion to Henry-Stewart talk by Zhao (2026,\n), which gathers information, metadata\nand scripts to showcase modern genetic analysis -- ranging from\ntesting of polymorphic variant(s) for Hardy-Weinberg\nequilibrium, association with traits using genetic and\nstatistical models, Bayesian implementation, power calculation\nin study design, and genetic annotation. It also covers R\nintegration with the Linux environment, GitHub, package\ncreation and web applications. The earlier version by Zhao\n(2009, ) provides a brief introduction\nto these topics.", "License": "MIT + file LICENSE", "URL": "https://jinghuazhao.github.io/gaawr2/,\nhttps://github.com/jinghuazhao/gaawr2", "BugReports": "https://github.com/jinghuazhao/gaawr2/issues", "Encoding": "UTF-8", "RdMacros": "Rdpack", "VignetteBuilder": "knitr, rmarkdown, bookdown", "LazyData": "Yes", "LazyLoad": "Yes", "LazyDataCompression": "xz", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://jinghuazhao.r-universe.dev", "Date/Publication": "2026-10-23 20:54:50 UTC", "RemoteUrl": "https://github.com/jinghuazhao/gaawr2", "RemoteRef": "HEAD", "RemoteSha": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-23 22:32:52 UTC", "User": "root" }, "Author": "Jing Hua Zhao [aut, cre] (ORCID:\n, ORCID:\n),\nBenjamin Altmann [ctb],\nBrian Ripley [ctb]", "_user": "jinghuazhao", "_type": "src", "_file": "gaawr2_0.0.9.tar.gz", "_fileid": "https://r2.ropensci.org/b003e8931c4fa244a3215ec2fd23d118e98d3475733c1246bc95cb2fcf7fb9e8", "_filesize": 6193728, "_sha256": "b003e8931c4fa244a3215ec2fd23d118e98d3475733c1246bc95cb2fcf7fb9e8", "_expires": "2027-01-31T22:45:32.000Z", "_created": "2026-10-23T22:32:52.000Z", "_published": "2026-10-23T22:45:34.484Z", "_upstream": "https://github.com/jinghuazhao/gaawr2", "_status": "success", "_maintainer": { "name": "Jing Hua Zhao", "email": "jinghuazhao@hotmail.com", "login": "jinghuazhao", "orcid": "0000-0002-1463-5870", "description": "Methods and applications in human health-related research", "uuid": 12497005 }, "_jobs": [ { "job": 120690057441, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12536088276" }, { "job": 120690057331, "time": 278, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12536372596" }, { "job": 120690057428, "time": 398, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12536209231" }, { "job": 120690057281, "time": 135, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12536447802" }, { "job": 120687264486, "time": 471, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12536780890" }, { "job": 120690057288, "time": 200, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12537095174" }, { "job": 120690057369, "time": 138, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12535833422" }, { "job": 120690057421, "time": 174, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12535789674" }, { "job": 120690057569, "time": 257, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12536856392" } ], "_buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542", "_commit": { "id": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "author": "jinghuazhao@github.com ", "committer": "jinghuazhao@github.com ", "message": "NEWS.md\n", "time": 1792788890 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "gap", "role": "Imports" }, { "package": "gap.datasets", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "BLR", "role": "Suggests" }, { "package": "BGLR", "role": "Suggests" }, { "package": "biomaRt", "role": "Suggests" }, { "package": "bookdown", "role": "Suggests" }, { "package": "Cairo", "role": "Suggests" }, { "package": "EnsDb.Hsapiens.v75", "role": "Suggests" }, { "package": "ensembldb", "role": "Suggests" }, { "package": "GMMAT", "role": "Suggests" }, { "package": "HardyWeinberg", "role": "Suggests" }, { "package": "haplo.stats", "role": "Suggests" }, { "package": "htmltools", "role": "Suggests" }, { "package": "httr", "role": "Suggests" }, { "package": "httpuv", "role": "Suggests" }, { "package": "jsonlite", "role": "Suggests" }, { "package": "kableExtra", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "MCMCglmm", "role": "Suggests" }, { "package": "plumber", "role": "Suggests" }, { "package": "powerEQTL", "role": "Suggests" }, { "package": "R2jags", "role": "Suggests" }, { "package": "regress", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "Rsamtools", "role": "Suggests" }, { "package": "SNPassoc", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "tidyr", "role": "Suggests" } ], "_owner": "jinghuazhao", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-05", "n": 33 }, { "week": "2026-11", "n": 19 }, { "week": "2026-25", "n": 63 }, { "week": "2026-26", "n": 14 }, { "week": "2026-43", "n": 22 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jinghuazhao", "count": 934, "uuid": 12497005 } ], "_userbio": { "uuid": 12497005, "type": "user", "name": "Jing Hua Zhao", "followers": 113, "description": "Methods and applications in human health-related research" }, "_downloads": { "count": 381, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gaawr2" }, "_devurl": "https://github.com/jinghuazhao/gaawr2", "_pkgdown": "https://jinghuazhao.github.io/gaawr2/", "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gaawr2.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/jinghuazhao/gaawr2", "_realowner": "jinghuazhao", "_cranurl": true, "_releases": [ { "version": "0.0.2", "date": "2025-02-21" }, { "version": "0.0.3", "date": "2025-03-24" }, { "version": "0.0.5", "date": "2026-01-30" }, { "version": "0.0.7", "date": "2026-03-10" }, { "version": "0.0.8", "date": "2026-06-17" }, { "version": "0.0.9", "date": "2026-10-23" } ], "_exports": [ "welcome" ], "_datasets": [ { "name": "diabetes", "title": "Diabetes Dataset", "object": "diabetes", "class": [ "data.frame" ], "fields": [ "ID", "No_Pation", "Gender", "AGE", "Urea", "Cr", "HbA1c", "Chol", "TG", "HDL", "LDL", "VLDL", "BMI", "CLASS" ], "rows": 1000, "table": true, "tojson": true }, { "name": "DiaHealth", "title": "DiaHealth", "object": "DiaHealth", "class": [ "data.frame" ], "fields": [ "age", "gender", "pulse_rate", "systolic_bp", "diastolic_bp", "glucose", "height", "weight", "bmi", "family_diabetes", "hypertensive", "family_hypertension", "cardiovascular_disease", "stroke", "diabetic" ], "rows": 5437, "table": true, "tojson": true } ], "_help": [ { "page": "welcome", "title": "An enhanced welcome", "topics": [ "welcome" ] } ], "_pkglogo": "https://github.com/jinghuazhao/gaawr2/raw/HEAD/man/figures/logo.svg", "_readme": "https://github.com/jinghuazhao/gaawr2/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bslib", "cachem", "cli", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "gap", "gap.datasets", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "openssl", "otel", "pillar", "pkgconfig", "plotly", "promises", "purrr", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "Rdpack", "rlang", "rmarkdown", "S7", "sass", "scales", "stringi", "stringr", "survival", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "gaawr2.Rmd", "filename": "gaawr2.html", "title": "Genetic Association Analysis", "engine": "knitr::rmarkdown", "headings": [ "Hello, world!", "R", "Linux", "Language elements", "Data analysis", "HardyWeinberg", "SNPassoc", "haplo.stats", "GWAS", "GMMAT", "h2.jags", "powerEQTL", "Annotations", "EnsDb.Hsapiens.v75", "biomaRt", "Experimental Factor Ontology (EFO)", "OpenTargets", "Additional packages", "gaawr2", "Summary", "References" ], "created": "2025-01-14 10:48:32", "modified": "2026-10-23 14:45:55", "commits": 156 }, { "source": "web.Rmd", "filename": "web.html", "title": "Web Facilities", "engine": "knitr::rmarkdown", "headings": [ "Hello, world!", "Python", "R", "URL availability", "Data source", "A meta-analysis", "plumber", "Data access", "Browser/console", "httpuv", "References" ], "created": "2025-01-14 22:25:21", "modified": "2026-10-23 14:45:55", "commits": 38 } ], "_score": 4.698970004336019, "_indexed": true, "_nocasepkg": "gaawr2", "_universes": [ "jinghuazhao" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.9", "date": "2026-10-23T22:36:34.000Z", "distro": "resolute", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/11f95996f5a4f9438626f0f7b74c5ec00ba24f2c0c7fefda736a1cc2a461fff2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.6.1", "os": "linux", "version": "0.0.9", "date": "2026-10-23T22:37:04.000Z", "distro": "resolute", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/269d3204fc384f5b79f4d449dd5aa30df9077fe72247a1902cfdac25884bf267", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.5.3", "os": "mac", "version": "0.0.9", "date": "2026-10-23T22:42:43.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/883f1c0f0dab31e936cf3c7c55161db46d74a7fffacdc6b7b57f63a898fdb094", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.6.1", "os": "mac", "version": "0.0.9", "date": "2026-10-23T22:39:58.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/6e5a633c4f0926ccafc5cfa4b903e6a3112c7aed7b7f474f35c1b5db582045f9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.9", "date": "2026-10-23T22:36:31.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/03ced1bb6f68347312514c2304074d7fee023d411d7230f8914042e1435f93cf", "status": "success", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.7.0", "os": "win", "version": "0.0.9", "date": "2026-10-23T22:34:56.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/b484ce13382abf5dfdc17df23404002c7d5c9f7ffd327b8a6d3aadeb1daf62be", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.5.3", "os": "win", "version": "0.0.9", "date": "2026-10-23T22:35:26.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/26ff1d67d5ef5aec6e5bf7a00b196582ee88f922fc38f10d6d6844b04e4d7923", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" }, { "r": "4.6.1", "os": "win", "version": "0.0.9", "date": "2026-10-23T22:36:45.000Z", "commit": "4a89c0f6b16fa5daaa8010b7fbc360d23ac328f0", "fileid": "https://r2.ropensci.org/fdf882e8a7566c06c70f18c7a8bee0c0ded8272d57d9b23347a7f6df3948cf45", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/40033471542" } ] }