{ "_id": "6a281cdea476d7de6d3c6aec", "Type": "Package", "Package": "gap", "Title": "Genetic Analysis Package", "Version": "1.15.3", "Date": "2026-06-09", "Authors@R": "c(\nperson(\"Jing Hua\", \"Zhao\", role = c(\"aut\", \"cre\"),\nemail = \"jinghuazhao@hotmail.com\",\ncomment = c(ORCID = \"0000-0002-1463-5870\", \"0000-0003-4930-3582\")),\nperson(\"Kurt\", \"Hornik\", role = \"ctb\"),\nperson(\"Brian\", \"Ripley\", role = \"ctb\"),\nperson(\"Uwe\", \"Ligges\", role = \"ctb\"),\nperson(\"Achim\", \"Zeileis\", role = \"ctb\")\n)", "Description": "As first reported [Zhao, J. H. 2007. \"gap: Genetic\nAnalysis Package\". J Stat Soft 23(8):1-18.\n], it is designed as an integrated\npackage for genetic data analysis of both population and family\ndata. Currently, it contains functions for sample size\ncalculations of both population-based and family-based designs,\nprobability of familial disease aggregation, kinship\ncalculation, statistics in linkage analysis, and association\nanalysis involving genetic markers including haplotype analysis\nwith or without environmental covariates. Over years, the\npackage has been developed in-between many projects hence also\nin line with the name (gap).", "License": "GPL (>= 2)", "URL": "https://github.com/jinghuazhao/R", "BugReports": "https://github.com/jinghuazhao/R/issues", "LazyData": "Yes", "LazyLoad": "Yes", "NeedsCompilation": "yes", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Roxygen": "list(markdown=TRUE)", "RdMacros": "Rdpack", "Config/roxygen2/version": "8.0.0", "RoxygenNote": "7.3.3", "Packaged": { "Date": "2026-06-09 13:51:36 UTC", "User": "root" }, "Author": "Jing Hua Zhao [aut, cre] (ORCID:\n, 0000-0003-4930-3582),\nKurt Hornik [ctb], Brian Ripley [ctb], Uwe Ligges [ctb], Achim\nZeileis [ctb]", "Maintainer": "Jing Hua Zhao ", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://jinghuazhao.r-universe.dev", "Date/Publication": "2026-06-09 13:29:43 UTC", "RemoteUrl": "https://github.com/jinghuazhao/r", "RemoteRef": "HEAD", "RemoteSha": 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}, { "page": "geno.recode", "title": "Genotype recoding", "topics": [ "geno.recode" ] }, { "page": "get_b_se", "title": "Get b and se from AF, n, and z", "topics": [ "get_b_se" ] }, { "page": "get_pve_se", "title": "Get pve and its standard error from n, z", "topics": [ "get_pve_se" ] }, { "page": "get_sdy", "title": "Get sd(y) from AF, n, b, se", "topics": [ "get_sdy" ] }, { "page": "gif", "title": "Kinship coefficient and genetic index of familiality", "topics": [ "gif" ] }, { "page": "grid2d", "title": "Two-dimensional grid", "topics": [ "grid2d" ] }, { "page": "h2_mzdz", "title": "ACE heritability estimation from MZ/DZ twin correlations", "topics": [ "h2_mzdz" ] }, { "page": "h2.jags", "title": "Heritability estimation based on genomic relationship matrix using JAGS", "topics": [ "h2.jags" ] }, { "page": "h2G", "title": "Heritability and its variance", "topics": [ "h2G" ] }, { "page": "h2GE", "title": "Heritability and its variance when there is an environment component", "topics": 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