{
  "_id": "6a2742e524555f66ed52dc7c",
  "Package": "tdthap",
  "Version": "1.3",
  "Date": "2023-11-29",
  "Title": "TDT Tests for Extended Haplotypes",
  "Author": "David Clayton",
  "Maintainer": "Jing Hua Zhao <jinghuazhao@hotmail.com>",
  "URL": "https://github.com/jinghuazhao/R",
  "BugReports": "https://github.com/jinghuazhao/R/issues",
  "Description": "Functions and examples are provided for\nTransmission/disequilibrium tests for extended marker\nhaplotypes, as in Clayton, D. and Jones, H. (1999)\n\"Transmission/disequilibrium tests for extended marker\nhaplotypes\". Amer. J. Hum. Genet., 65:1161-1169,\n<doi:10.1086/302566>.",
  "License": "Artistic-2.0",
  "Repository": "https://jinghuazhao.r-universe.dev",
  "Date/Publication": "2026-06-08 21:13:14 UTC",
  "RemoteUrl": "https://github.com/jinghuazhao/r",
  "RemoteRef": "HEAD",
  "RemoteSha": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
  "RemoteSubdir": "tdthap",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-08 22:28:21 UTC",
    "User": "root"
  },
  "MD5sum": "2f69294f2b32b83c7d6c53c2a7cd223b",
  "_user": "jinghuazhao",
  "_type": "src",
  "_file": "tdthap_1.3.tar.gz",
  "_fileid": "b01443b9ce71f6f23513228b68831bb7cdeab421cd23e724dbe09598ec5c657c",
  "_filesize": 620292,
  "_sha256": "b01443b9ce71f6f23513228b68831bb7cdeab421cd23e724dbe09598ec5c657c",
  "_created": "2026-06-08T22:28:21.000Z",
  "_published": "2026-06-08T22:32:04.999Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80209864402,
      "time": 96,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7493994407"
    },
    {
      "job": 80209864404,
      "time": 86,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7493990688"
    },
    {
      "job": 80209864406,
      "time": 92,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493993491"
    },
    {
      "job": 80209864405,
      "time": 91,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493992515"
    },
    {
      "job": 80209864407,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7493995724"
    },
    {
      "job": 80209864408,
      "time": 133,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7494004345"
    },
    {
      "job": 80209864414,
      "time": 91,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493992379"
    },
    {
      "job": 80209864437,
      "time": 187,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7494020528"
    },
    {
      "job": 80209458377,
      "time": 173,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493966232"
    },
    {
      "job": 80209864374,
      "time": 81,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493989662"
    },
    {
      "job": 80209864411,
      "time": 71,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7493986178"
    },
    {
      "job": 80209864399,
      "time": 58,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7493982564"
    },
    {
      "job": 80209864400,
      "time": 61,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7493983441"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jinghuazhao/r",
  "_commit": {
    "id": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
    "author": "jinghuazhao@github.com <jinghuazhao@hotmail.com>",
    "committer": "jinghuazhao@github.com <jinghuazhao@hotmail.com>",
    "message": "README\n",
    "time": 1780953194
  },
  "_maintainer": {
    "name": "Jing Hua Zhao",
    "email": "jinghuazhao@hotmail.com",
    "login": "jinghuazhao",
    "orcid": "0000-0002-1463-5870",
    "description": "Methods and applications in human health-related research",
    "uuid": 12497005
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 1.5.0",
      "role": "Depends"
    }
  ],
  "_owner": "jinghuazhao",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 1
    },
    {
      "week": "2025-27",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 1
    },
    {
      "week": "2026-05",
      "n": 2
    },
    {
      "week": "2026-06",
      "n": 11
    },
    {
      "week": "2026-07",
      "n": 35
    },
    {
      "week": "2026-08",
      "n": 9
    },
    {
      "week": "2026-11",
      "n": 2
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 50
    },
    {
      "week": "2026-14",
      "n": 32
    },
    {
      "week": "2026-19",
      "n": 40
    },
    {
      "week": "2026-20",
      "n": 48
    },
    {
      "week": "2026-21",
      "n": 48
    },
    {
      "week": "2026-22",
      "n": 38
    },
    {
      "week": "2026-23",
      "n": 15
    },
    {
      "week": "2026-24",
      "n": 19
    }
  ],
  "_tags": [],
  "_topics": [
    "genetics",
    "imputation",
    "lmm"
  ],
  "_stars": 13,
  "_contributors": [
    {
      "user": "jinghuazhao",
      "count": 2829,
      "uuid": 12497005
    },
    {
      "user": "guido-s",
      "count": 1,
      "uuid": 10942806
    }
  ],
  "_userbio": {
    "uuid": 12497005,
    "type": "user",
    "name": "Jing Hua Zhao",
    "description": "Methods and applications in human health-related research"
  },
  "_downloads": {
    "count": 239,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tdthap"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/jinghuazhao/r",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/tdthap.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jinghuazhao/r",
  "_realowner": "jinghuazhao",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.1-2",
      "date": "2007-11-22"
    },
    {
      "version": "1.1-3",
      "date": "2012-03-06"
    },
    {
      "version": "1.1-4",
      "date": "2012-03-19"
    },
    {
      "version": "1.1-5",
      "date": "2012-03-22"
    },
    {
      "version": "1.1-6",
      "date": "2013-04-08"
    },
    {
      "version": "1.1-7",
      "date": "2013-12-10"
    },
    {
      "version": "1.1-9",
      "date": "2018-06-30"
    },
    {
      "version": "1.1-11",
      "date": "2019-08-22"
    },
    {
      "version": "1.2",
      "date": "2022-10-29"
    },
    {
      "version": "1.3",
      "date": "2023-11-30"
    }
  ],
  "_exports": [
    "get.similarity",
    "hap.transmit",
    "set.similarity",
    "tdt.quad",
    "tdt.rr",
    "tdt.select"
  ],
  "_help": [
    {
      "page": "get.similarity",
      "title": "Interogate similarity function for Geary-Moran TDT tests",
      "topics": [
        "get.similarity"
      ]
    },
    {
      "page": "hap.transmit",
      "title": "Build parental haplotypes in nuclear families",
      "topics": [
        "hap.transmit"
      ]
    },
    {
      "page": "set.similarity",
      "title": "Set similarity function for Geary-Moran type TDT tests",
      "topics": [
        "set.similarity"
      ]
    },
    {
      "page": "tdt.quad",
      "title": "TDT tests for extended haplotypes",
      "topics": [
        "tdt.quad"
      ]
    },
    {
      "page": "tdt.rr",
      "title": "Calculate haplotype relative risks in TDT studies",
      "topics": [
        "tdt.rr"
      ]
    },
    {
      "page": "tdt.select",
      "title": "Select informative transmissions of sub-haplotypes for the TDT test",
      "topics": [
        "tdt.select"
      ]
    }
  ],
  "_readme": "https://github.com/jinghuazhao/r/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "tdthap-paper.Rnw",
      "filename": "tdthap-paper.pdf",
      "title": "Disequilibrium Tests for Extended Marker Haplotypes",
      "engine": "utils::Sweave",
      "headings": [
        "Maintainer's note",
        "Paper"
      ],
      "created": "2018-01-26 12:35:08",
      "modified": "2018-06-29 21:56:45",
      "commits": 2
    }
  ],
  "_score": 6.04336227802113,
  "_indexed": true,
  "_nocasepkg": "tdthap",
  "_universes": [
    "jinghuazhao"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-08T22:30:09.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "549cec8d588b8016256e2091c5b6bbcfe3bdd3fdba27f38047071f1c6abfebeb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-08T22:29:53.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "602be486d27b359816c5bbd16639eeeb3003ee33f4e7511e5b38ae2c69fb3073",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-08T22:30:05.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "b2a67467a8a95e9d8a3efb62793b16cbe1dde20e44d5b353450b2bf599697943",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-08T22:30:00.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "d91aabc39440a5cfbff5f89ec74da68dd0a24a86b5b04c5a85aca3c90e24a11d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-08T22:30:07.000Z",
      "arch": "aarch64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "5c325ce02245a83b8aab49e8da3287d8089317e4b65ff97cbdf9ea8a2f244fcc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-08T22:30:31.000Z",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "f7aacb6552d2d4deeb61a7f9a3eb9160764163e60e948217f6c5fae64161693e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-08T22:29:53.000Z",
      "arch": "aarch64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "42276be5150a0ae1d6c892f038a8a2974caa4559c13b75805d454622d76d22e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-08T22:31:21.000Z",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "64b4302a3760b9d3845831406b5e47a257d47b91a02a59c5025a6ba5d3f124ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3",
      "date": "2026-06-08T22:29:57.000Z",
      "arch": "emscripten",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "f6aa5c3bfc6a89b87dfa988a2c24adf35ef814095c8f63424b41a6e390d5aed2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-08T22:29:26.000Z",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "d3adac02cad923592c20155c3c41ac456602beacdef822bd28a8361acbb576f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-08T22:29:16.000Z",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "4a98f2d4eba2c104185023ce4e93a7b927be5864a13a7febf9495807488c721a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-08T22:29:20.000Z",
      "arch": "x86_64",
      "commit": "a5022ae597ba3b325f76fc1a35d6d477cab9642c",
      "fileid": "e3593255954aee0146565da75a636109f3c565a49f17a38e01e9e18b7a4031d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jinghuazhao/actions/runs/27170899806"
    }
  ]
}