Type: Package
Package: gap
Title: Genetic Analysis Package
Version: 1.15.3
Date: 2026-06-24
Authors@R: c(
    person("Jing Hua", "Zhao", role = c("aut", "cre"),
           email = "jinghuazhao@hotmail.com",
           comment = c(ORCID = "0000-0002-1463-5870", "0000-0003-4930-3582")),
    person("Kurt", "Hornik", role = "ctb"),
    person("Brian", "Ripley", role = "ctb"),
    person("Uwe", "Ligges", role = "ctb"),
    person("Achim", "Zeileis", role = "ctb")
  )
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic
        Analysis Package". J Stat Soft 23(8):1-18.
        <doi:10.18637/jss.v023.i08>], it is designed as an integrated
        package for genetic data analysis of both population and family
        data. Currently, it contains functions for sample size
        calculations of both population-based and family-based designs,
        probability of familial disease aggregation, kinship
        calculation, statistics in linkage analysis, and association
        analysis involving genetic markers including haplotype analysis
        with or without environmental covariates. Over years, the
        package has been developed in-between many projects hence also
        in line with the name (gap).
License: GPL (>= 2)
URL: https://github.com/jinghuazhao/R
BugReports: https://github.com/jinghuazhao/R/issues
Depends: R (>= 2.10), gap.datasets (>= 0.0.6)
Imports: dplyr, ggplot2, plotly, Rdpack
Suggests: BradleyTerry2, DiagrammeR, MASS, Matrix, MCMCglmm, R2jags,
        bdsmatrix, bookdown, calibrate, circlize, coda, cowplot, coxme,
        foreign, genetics, grDevices, haplo.stats, htmltools,
        htmlwidgets, jsonlite, kinship2, knitr, lattice, magic,
        matrixStats, meta, metafor, nlme, pedigree, pedigreemm,
        plotrix, readr, remotes, reshape, rmarkdown, rms, scales,
        survival, valr
Enhances: shiny
LazyData: Yes
LazyLoad: Yes
NeedsCompilation: yes
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown=TRUE)
RdMacros: Rdpack
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
Packaged: 2026-07-01 09:53:39 UTC; root
Author: Jing Hua Zhao [aut, cre] (ORCID:
        <https://orcid.org/0000-0002-1463-5870>, 0000-0003-4930-3582),
        Kurt Hornik [ctb], Brian Ripley [ctb], Uwe Ligges [ctb], Achim
        Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://jinghuazhao.r-universe.dev
Date/Publication: 2026-07-01 09:28:12 UTC
RemoteUrl: https://github.com/jinghuazhao/r
RemoteRef: HEAD
RemoteSha: dea886557f75bf229d8b859dc09cbdb8de09a15c
RemoteSubdir: gap