NEWS
pQTLdata 0.6
(2025/3/15)
- Add logo/favicons from Grok-3, huggingface.co/spaces/not-lain/background-removal, and usethis::use_logo() (jpg), DjVuLibre/3.5.28, ImageMagick/7.1.1-31 (png), and pkgdown::build_favicons().
- Add reference to swath_ms.
- Drop GitHub in _pkgdown.yml.
- Revise pQTLdata.Rmd.
- Revise DESCRIPTION/(Title, URL), README.Rmd after CRAN publication.
pQTLdata 0.5 (2025-03-07)
(2025/3/5)
- Add README.Rmd so as to extract DESCRIPTION/Description to README.md.
- Automate knitr::knit("README.Rmd");devtools::document() and pkgdown::build_site().
- Revise DESCRIPTION/pQTLdata.R(md)/inst/scripts (suggested by Beni Altmann).
- Revise _pkgdown.yml.
pQTLdata 0.4
(2025/3/2)
- CRAN submission
- Extend Description and add seer1980 to data/datalist.
pQTLdata 0.3
(2025/2/20)
- Add Olink-Target-96-Assay-List.xlsx (15 panels).
- Drop olink-explore-ht-assay-list-2023-07-12.xlsx (5,343) for olink-explore-ht-assay-list.xlsx (5,416=5,400+).
- Add single quotes to software names in Title/Description inside DESCRIPTION (suggested by Uwe Ligges).
- Minor changes including splitting utils.R and vignette.
pQTLdata 0.2
(2025/2/19)
- Remove biomaRt, hg19, hg19Tables, st[4|6|18] except their R scripts and revise vignette.
- Add Ensembl gene ID to caprion & URL to DESCRIPTION but simplify inst/scripts/docs.sh.
- Add Information on Thermo Fisher Scientific - LSMS / NCI Proteomic Data Commons.
- Add/remove information for OlinkĀ® Target 96 Inflammation Panels.
- Add inst/README.md, SomaLogic/ given SomaScan.db is developed.
pQTLdata 0.1
(2024/06/10)
- Add
- Olink/, EndNote/, scripts/ to inst/.
- caprion.rda and caprion.R.
- seer1980.rda and seer1980.R.
- biomaRt.rda, hg19.rda, hg19Tables.rda, inf1.rda, scallop_inf1, st4.rda, st6.rda, st18.rda, but drop hgTables.
Q8NF90 and Q8WWJ7 in inf1.rda were not listed at the UCSC, and replaced with P12034 and P30203 as on UniProt.
- SomaScan lookup (panels, box, ST4, ST6).
- Remove \uFEFF characters with iconv.
- Adopt pkgdown, bookdown-driven vignette, a 1/10 version increment algorithm.
- Imports knitr, Rdpack.
- Suggests dplyr, grid, VennDiagram.
- First release.