Package: tdthap 1.4
tdthap: TDT Tests for Extended Haplotypes
Functions and examples for transmission/disequilibrium tests for extended marker haplotypes, as described in Clayton and Jones (1999) <doi:10.1086/302566>.
Authors:
tdthap_1.4.tar.gz
tdthap_1.4.zip(r-4.7)tdthap_1.4.zip(r-4.6)tdthap_1.4.zip(r-4.5)
tdthap_1.4.tgz(r-4.6-x86_64)tdthap_1.4.tgz(r-4.6-arm64)tdthap_1.4.tgz(r-4.5-x86_64)tdthap_1.4.tgz(r-4.5-arm64)
tdthap_1.4.tar.gz(r-4.7-arm64)tdthap_1.4.tar.gz(r-4.7-x86_64)tdthap_1.4.tar.gz(r-4.6-arm64)tdthap_1.4.tar.gz(r-4.6-x86_64)
tdthap_1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
tdthap/json (API)
| # Install 'tdthap' in R: |
| install.packages('tdthap', repos = c('https://jinghuazhao.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jinghuazhao/r/issues
Last updated from:31fbd2effe. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 116 | ||
| linux-devel-x86_64 | OK | 119 | ||
| source / vignettes | OK | 140 | ||
| linux-release-arm64 | OK | 158 | ||
| linux-release-x86_64 | OK | 150 | ||
| macos-release-arm64 | OK | 89 | ||
| macos-release-x86_64 | OK | 197 | ||
| macos-oldrel-arm64 | OK | 87 | ||
| macos-oldrel-x86_64 | OK | 200 | ||
| windows-devel | OK | 59 | ||
| windows-release | OK | 92 | ||
| windows-oldrel | OK | 71 | ||
| wasm-release | OK | 83 |
Exports:get.similarityhap.transmitset.similaritytdt.quadtdt.rrtdt.select
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Interogate similarity function for Geary-Moran TDT tests | get.similarity |
| Build parental haplotypes in nuclear families | hap.transmit |
| Set similarity function for Geary-Moran type TDT tests | set.similarity |
| TDT tests for extended haplotypes | tdt.quad |
| Calculate haplotype relative risks in TDT studies | tdt.rr |
| Select informative transmissions of sub-haplotypes for the TDT test | tdt.select |
