Package: tdthap 1.5

tdthap: TDT Tests for Extended Haplotypes

Functions and examples for transmission/disequilibrium tests for extended marker haplotypes, as described in Clayton and Jones (1999) <doi:10.1086/302566>.

Authors:David Clayton [aut], Jing Hua Zhao [cre]

tdthap_1.5.tar.gz
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tdthap_1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
tdthap/json (API)

# Install 'tdthap' in R:

install.packages('tdthap', repos = c('https://jinghuazhao.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jinghuazhao/r/issues

On CRAN:

genetics imputation lmm

6.17 score 13 stars 6 scripts 389 downloads 1 mentions 6 exports 0 dependencies

Last updated from:3706700946. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	100
linux-devel-x86_64	OK	114
source / vignettes	OK	180
linux-release-arm64	OK	92
linux-release-x86_64	OK	137
macos-release-arm64	OK	90
macos-release-x86_64	OK	237
macos-oldrel-arm64	OK	120
macos-oldrel-x86_64	OK	269
windows-devel-arm64	OK	169
windows-devel-x86_64	OK	99
windows-release-arm64	OK	203
windows-release-x86_64	OK	73
windows-oldrel-x86_64	OK	87
wasm-release	OK	85

Exports:get.similarity hap.transmit set.similarity tdt.quad tdt.rr tdt.select

Dependencies:

Disequilibrium Tests for Extended Marker Haplotypes

Rendered fromtdthap.Rnwusingutils::Sweave

Last update: 2026-06-25
Started: 2026-06-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Interogate similarity function for Geary-Moran TDT tests	get.similarity
Build parental haplotypes in nuclear families	hap.transmit
Set similarity function for Geary-Moran type TDT tests	set.similarity
TDT tests for extended haplotypes	tdt.quad
Calculate haplotype relative risks in TDT studies	tdt.rr
Select informative transmissions of sub-haplotypes for the TDT test	tdt.select